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Histology and laboratory techniques

Zoology (B.Sc) · Applied zoology · free study notes for exams, placements and interviews

In short

Histology is the microscopic study of the structure of tissues; histological technique is the chain of steps - fixation, dehydration, embedding, sectioning, staining and mounting - that turns a piece of soft tissue into a permanent, stained, transparent section fit for a microscope. Applied zoology adds the wider laboratory toolkit: microscopy, micrometry, smears and squashes, histochemistry, cell counting, centrifugation, chromatography, electrophoresis and spectrophotometry. It is examined in every B.Sc Zoology core paper (UGC CBCS "Cell Biology / Techniques in Biology / Histology" and practical vivas), in CSIR-UGC NET and GATE Life Sciences, and in entrance tests for M.Sc. and for medical laboratory technology. The same skills earn jobs in Indian pathology and histopathology labs (Dr Lal PathLabs, SRL, Metropolis, Thyrocare), CSIR-CDRI/IICT and ICMR institutes, pharma toxicology and CRO units, fish and veterinary disease diagnostic labs, and forensic science laboratories.

Explained

Animal tissues - what a section is read for

The paraffin method - step by step

  1. Collection and killing: tissue taken immediately after death (autolysis begins within minutes); piece kept thin - 3-5 mm - so fixative penetrates (penetration roughly follows the square-root-of-time law).
  2. Fixation: stops autolysis and bacterial decay, hardens tissue, preserves structure, makes cells receptive to stains. Volume of fixative ≥ 10-20× tissue volume, 6-24 h.
    • *Coagulant fixatives:* ethanol, acetic acid, picric acid, mercuric chloride. *Cross-linking (additive):* formaldehyde, glutaraldehyde, osmium tetroxide.
    • *Common fluids:* 10% neutral buffered formalin (NBF - 4% formaldehyde, routine), Bouin's fluid (picric acid + formalin + acetic acid - excellent for nuclei and glycogen-free work; yellow colour washed out with 70% alcohol), Zenker's and Helly's (mercuric - bone marrow, mitochondria), Carnoy's (ethanol-chloroform-acetic, fast, for nucleic acids), Karnovsky's (paraformaldehyde + glutaraldehyde) and 1-4% glutaraldehyde followed by osmium tetroxide for electron microscopy.
  3. Washing: running water for formalin; 70% alcohol for picric and mercuric fixatives (plus iodine-thiosulphate to remove mercury pigment).
  4. Dehydration: ascending alcohol grades 30 → 50 → 70 → 90 → absolute (two changes), each 30-60 min; sudden strong alcohol causes shrinkage and distortion. Acetone and dioxane are alternatives.
  5. Clearing: alcohol replaced by a wax-miscible agent with a refractive index near that of protein, so tissue turns translucent - xylene (routine), toluene, benzene (carcinogenic, discouraged), chloroform, cedarwood oil (slow, gentle).
  6. Impregnation (infiltration): 2-3 changes of molten paraffin wax (56-58 °C melting point) in an oven at about 2-5 °C above the melting point, 1-2 h each.
  7. Blocking (embedding): tissue oriented in a mould (Leuckhart's L-pieces or plastic cassette) filled with wax and cooled rapidly for fine crystal structure.
  8. Trimming and sectioning: block clamped in a microtome; ribbon of sections cut at 5-7 µm for routine light microscopy (3 µm for kidney and blood-forming tissue, 10-15 µm for nerve tissue).
  9. Affixing: sections floated on warm water (about 45 °C) to flatten, picked up on a slide smeared with Mayer's egg albumen (albumen-glycerine) or poly-L-lysine/APES for immunostaining; dried at 37-60 °C.
  10. Dewaxing and hydration: xylene (two changes) → descending alcohols → water.
  11. Staining: usually H&E (below), then dehydration, clearing and mounting in DPX or Canada balsam under a cover slip. Mountant refractive index (~1.52) must match glass to avoid glare.
  12. Alternative embedding: celloidin/nitrocellulose for large, hard, mixed-density tissue (eye, cochlea, brain) - no heat, minimal shrinkage, but very slow; resin (araldite, Epon, LR White) for 0.5-1 µm semi-thin and 50-90 nm ultra-thin sections; frozen/cryostat sections (−20 to −30 °C) for rapid intra-operative diagnosis and for enzyme and lipid histochemistry, since paraffin processing dissolves lipids and destroys most enzyme activity.

Microtomes, microscopes and measurement

Staining - principles and the standard repertoire

Non-sectioning preparations and allied techniques

Laboratory safety, ethics and Indian practice

Key points

Formulas and examples

Total magnification M = magnification of objective × magnification of eyepiece (× tube factor, if any)
Limit of resolution d = 0.61 λ / NA (λ = wavelength of light, nm; NA = numerical angular aperture, dimensionless); NA = n sin θ, n = refractive index of the medium
Useful magnification ≈ 500 × NA to 1000 × NA; beyond this is empty magnification
Calibration of ocular micrometer: 1 ocular division (µm) = (no. of stage divisions × 10 µm) / (no. of ocular divisions coinciding)
RBC per mm³ = (N × dilution × 1) / (area counted in mm² × depth 0.1 mm), where N = cells counted
WBC per mm³ = (N × dilution) / (area counted × 0.1)
Beer-Lambert law: A = ε c l (A = absorbance, ε = molar extinction coefficient in L mol⁻¹ cm⁻¹, c = concentration in mol L⁻¹, l = path length in cm); A = log₁₀(I₀/I) = 2 − log₁₀(%T)
Relative centrifugal force RCF (× g) = 1.118 × 10⁻⁵ × r × N² (r = radius in cm, N = speed in rpm)
Number of sections from a block = length of tissue along cutting direction / section thickness
Magnification of a drawing = size of drawing / actual size of object
TechniqueSpecimen stateResolution / thicknessMain useLimitation
Paraffin section + H&EFixed, dehydrated5-7 µm, ~0.2 µm resolutionRoutine architecture, histopathologyLipids and most enzymes lost; shrinkage
Frozen / cryostat sectionUnfixed, frozen8-15 µmRapid diagnosis, lipid and enzyme histochemistryIce-crystal artefact, poorer detail
Resin semi-thin / ultra-thinFixed, resin0.5-1 µm / 50-90 nmLight + TEM ultrastructureCostly, small sample, skilled work
Whole mountFixed, clearedWhole organismSmall invertebrates, parasitesOnly thin or transparent animals
Smear / squashFresh or briefly fixedSingle cell layerBlood films, chromosomes, cytologyNo tissue architecture
FixativeComposition (key)Best forCaution
10% NBF4% formaldehyde, phosphate bufferRoutine all-purposeSensitiser; masks antigens (needs retrieval)
Bouin'sPicric acid, formalin, acetic acidNuclei, soft tissue, invertebratesDissolves glycogen; picric stains and is explosive when dry
Carnoy'sEthanol, chloroform, acetic acidNucleic acids, chromosomesVery rapid, strong shrinkage
Zenker's / Helly'sMercuric chloride-basedBone marrow, mitochondriaMercury toxicity and pigment; special waste route
Glutaraldehyde + OsO₄2-4% glutaraldehyde, 1% OsO₄Electron microscopyPoor penetration (1 mm pieces); OsO₄ highly toxic

Where it is used

Interview questions

Common mistakes

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